rs246413963 SNP Detail

Summary

• ID
  rs246413963
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117581616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGCTCTC TCCCTCATCA
  ATCCCAGCAG TTAAAGATTT CTATCAGGAA CACACCCATT TACTAAATAG CAGCGGAGTG
  TCGAGATGGC CTTTTCCACC CCTCCCCAAA CAAGCTTCTT ATAAGGGCCT GGCTCGTGTG
  TGGAGTAAAG ATTATGGGAA TGGGCTTCCG TCGTGCCAGG CTATAAGCAA GGTGTATTCA
  R
  TTTTCCCGGG GAGAAAGGCA GCCAGGTAGC TGGGCAGGGA CAGGCTCGCG CAGCGGCAGC
  GGCAGCTACT CACCAGCGTG AGCTGTATTC TGACGGAGAA TCTCTTCTGG TACCAGAAGG
  TTTGGATGGC TATGATCACC GGCGTGGTCA TGGCCTTGGC CAGCTGATAG GTGCCTATGG
  TGTTGTTCTG CAGAGAAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499176	CHEV_10_117182767	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246413963					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117581616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	within coordinates
Cpgi2239	CpG island 2239	585 bp proximal
Gm66856	predicted gene, 66856	770 bp upstream
Rr439608	regulatory region 439608	1254 bp distal
Rr439609	regulatory region 439609	1867 bp distal
Rr439610	regulatory region 439610	231 bp proximal
Rr439611	regulatory region 439611	644 bp proximal
Rr439612	regulatory region 439612	781 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	620 bp downstream
Tssr99472	transcription start site region 99472	645 bp downstream