rs246416087 SNP Detail

Summary

• ID
  rs246416087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155925824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGCTTT CCACGACGGC
  AACTTCTCGC TGCTCATTCG CGGTACACTG TAGAACCGTA GTGGGCTGAA ACTTTGGCAG
  AAACTGAAAC CTTGGCGGCA GGGGTGAGGG TGGGGTGGAG GAGTGGGGAG GTGTGGTGGG
  TAGGGGGAGG GAGCTGAGAG GCCTTCCTAA GGTTGGAGCC TTGGATGGGC GGGGCCCTAG
  R
  AGGGATTGGC CGATTTTAGG GGAGGGGCCA TAGAGAGGAC GGGTTCCCTC AATCTAAGGG
  TATCTTCTGC CAAGCAGCTG TGGACAGAGG CGATGAAGGG GTGTACACCT GCAACCTGCA
  CCATCACTAC TGCCACCTCG ATGAGAGCCT GGCTGTGCGC CTCGAGGTTA CAGAGGATCG
  TGAGTGTGTC CCTTCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363804845	MGP_WTSI_4_155215476	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246416087					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804845	MGP_WTSI_4_155215476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155925824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	within coordinates
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	within coordinates
Mxra8os	matrix-remodelling associated 8, opposite strand	1189 bp upstream
Rr398927	regulatory region 398927	within coordinates
Rr606589	regulatory region 606589	1631 bp distal
Rr606590	regulatory region 606590	699 bp distal
Rr606591	regulatory region 606591	262 bp distal
Rr606592	regulatory region 606592	within coordinates
Rr606593	regulatory region 606593	199 bp distal
Tssr40724	transcription start site region 40724	1683 bp downstream
Tssr40725	transcription start site region 40725	1663 bp downstream
Tssr40726	transcription start site region 40726	1605 bp downstream
Tssr40727	transcription start site region 40727	1543 bp downstream
Tssr40728	transcription start site region 40728	1527 bp downstream
Tssr40729	transcription start site region 40729	259 bp downstream
Tssr40730	transcription start site region 40730	229 bp downstream
Tssr40731	transcription start site region 40731	200 bp downstream
Tssr40732	transcription start site region 40732	192 bp downstream
Tssr40733	transcription start site region 40733	45 bp upstream
Tssr40734	transcription start site region 40734	1684 bp upstream
Tssr44980	transcription start site region 44980	312 bp upstream
Tssr44981	transcription start site region 44981	263 bp upstream