rs246418855 SNP Detail

Summary

• ID
  rs246418855
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19115142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAAGGA CTAAAAGGTG
  ATATTTGAGC AAGAATCCAG AGATATGAAA TAACTGACAG CATTGTCCAG CCCTCAGGTG
  GGTTAGCCAC AAGCTGGGGC CAGCCACCCA GGCTATAGAG TGAGCTCCGG ACCAGCTTGG
  GTTACATAGT ACGACTGTCT ACTGAGGCCT GTACCTCATG AGATGGCTCA TGAGGTACAG
  G
  CCTTTTGACC TGAGTTCGAT TCCCACACAT AGTGGAAGGA AAGGACTGAA CCAAATTCTG
  CAGGTTTCCT CTTCCTTCCA CAGGCCAGAG GTATTGGATT CCATGGAGCT AGCCCTAAAG
  GTGATCGATC ATAAGCTGCC TGATTTGGGG GGTGGGAGTG GAGAGTGGGG CGGCTGGGAA
  CCCTGCTCCT CTTCAAAATC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss370747861	MGP_WTSI_7_19966566	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs246418855					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370747861	MGP_WTSI_7_19966566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19115142 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	335 bp proximal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	800 bp upstream
Gm26852	predicted gene, 26852	1003 bp downstream
Rr400148	regulatory region 400148	571 bp upstream
Rr643124	regulatory region 643124	303 bp proximal
Rr643125	regulatory region 643125	780 bp proximal
Tssr64844	transcription start site region 64844	788 bp upstream