rs246424052 SNP Detail

Summary

• ID
  rs246424052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:74796325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGTGGAA GAAGACCCCT
  CTAACAGTCT CGAGGAGACA AGCCTGACAT TGCCTCTCAA TTCTCCCTCC CTACCAAATT
  GCAGGAGGGA TCTGCTCTAA TACAACCAAG AGAGTTCTGT CTGCACAGGC AGGCCTGCTC
  TGAGTTCTCC GAGGTGCAAG GCCTGCAACC ACAAGGAAGG ACTGAAGCAG CCACCCTCCA
  Y
  ACAGTTACAC AGTTGTCTCA TCCACCTAAA CAGAACTATA GGGGACAATA CCCCTGCCTT
  AGCCCTAGGA TCTTTATGCA CCTCCTGCAC ACCTGACCTA TGGCCTGGGG ATACATGAAG
  CCTTGAGGGT TTCCCCTACA GCCAATCCTG TCCTTCTCAC ACAATACTGA GGTCAACACC
  ATAAGAACTG CCAAACCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss403796123	MGP_WTSI_X_72998058	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs246424052					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403796123	MGP_WTSI_X_72998058	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:74796325 () rs orientation: forward

Symbol	Name	Function Class
4933407K13Rik	RIKEN cDNA 4933407K13 gene	within coordinates
Rr4696	regulatory region 4696	1725 bp distal
Rr4697	regulatory region 4697	1676 bp proximal
Rr8775	regulatory region 8775	1275 bp proximal