rs246430417 SNP Detail

Summary

• ID
  rs246430417
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16236374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTCACCC AGCCTTCAAT
  TTTTGTAGCA GCAGTTATCA CACAAGATAC TGTGACTATT TAATCAATTA TATTGCCTGA
  CATTTCAGGA GTACTCACTG AGTTACAGTT TTGATGCGGG GACTCACTCA GTGAAGAAAC
  AAGAAGTGGC TGATTATGTA TGTCAGGCCT TAGTTTACTC ATGACGCCAA GGTTTAGGTT
  M
  AGAGACTTCT CCAAGGTTAT AAACTAATCA TTGCTAGGTA AGAATTCAAA CTGAGATTCG
  TGGAATTCCA AAGCCATGCT TCTCAGATAG GAGTAAAGTC AAGGCCTGCA AGCCTTTTCT
  ATTAGTTTTC GCTATGCACT TTCAACTTTC CAGCCTCAAT TCCTCTTCCG ACAAACTCCT
  TGAAAACCAA AAATGTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357084016	MGP_WTSI_3_16082210	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246430417					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357084016	MGP_WTSI_3_16082210	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16236374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12993	CpG island 12993	671 bp proximal
Gm64384	predicted gene, 64384	312 bp downstream
Rr397612	regulatory region 397612	774 bp upstream
Rr573789	regulatory region 573789	1824 bp distal
Rr573790	regulatory region 573790	512 bp proximal
Rr573791	regulatory region 573791	1037 bp proximal
Rr573792	regulatory region 573792	1498 bp proximal
Tssr833	transcription start site region 833	1403 bp downstream
Tssr28473	transcription start site region 28473	967 bp upstream
Tssr28474	transcription start site region 28474	998 bp upstream
Tssr28475	transcription start site region 28475	1087 bp upstream
Tssr28476	transcription start site region 28476	1654 bp upstream
Tssr32661	transcription start site region 32661	1432 bp downstream
Tssr32662	transcription start site region 32662	1623 bp downstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3	1002 bp upstream