rs246430939 SNP Detail

Summary

• ID
  rs246430939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92473423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA TTATATATCC TTTAATTTCA
  Y
  AGTTCTGATT TCTAAGAGGC TTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321612253	CHEV_5_92754590	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246430939					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92473423 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr1547	transcription start site region 1547	1238 bp downstream
Tssr47288	transcription start site region 47288	1785 bp downstream
Tssr47289	transcription start site region 47289	1775 bp downstream
Tssr47290	transcription start site region 47290	1760 bp downstream
Tssr47291	transcription start site region 47291	1718 bp downstream
Tssr47292	transcription start site region 47292	437 bp downstream
Tssr47293	transcription start site region 47293	1201 bp upstream
Tssr47294	transcription start site region 47294	1238 bp upstream
Tssr51867	transcription start site region 51867	1856 bp upstream
Tssr51868	transcription start site region 51868	1810 bp upstream
Tssr51869	transcription start site region 51869	1768 bp upstream
Tssr51870	transcription start site region 51870	1718 bp upstream
Tssr51871	transcription start site region 51871	1683 bp upstream
Tssr51872	transcription start site region 51872	430 bp upstream
Tssr51873	transcription start site region 51873	1226 bp downstream
Tssr51874	transcription start site region 51874	1251 bp downstream