rs246441299 SNP Detail

Summary

• ID
  rs246441299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135041602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTACAGG CAGTGGGGGA
  TGGGGGTGGG GGTGTTCCAG TGGCTGTCTT CTGGAAATAT CTGGAGCCCC CTTCCTCTCC
  TCTAGTAGGA GTGAGTCCCC ACTTCCCCCT CCTCCACCCC ACCCCCACCC CCAGAGTTTC
  TCTCACTTAG CAATGGCTTC ATCCCTCTCC TGCAGTACTT GCTCCAGGGA AGGTTCCGCC
  Y
  GGGTGTCCCC CAGTGCTCCT GCCGCTTGGG ATTCTGGGTT CTGTTGGGGA GTGATGGATG
  AGGAGGCAGT GACCTGGGGC TTGTCAGAAG GAGAAGCCTC ACCCTGGGTC CTTCTGCCCT
  GCCTCTGCCC TGCCTCATGC TATTTCCACT CAGTTTTACC ACCCTTTGCC TCCAGGGGGT
  GCTGCGCCGG CATCTTGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824612	MGP_WTSI_5_135488618	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246441299					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824612	MGP_WTSI_5_135488618	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135041602 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	573 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	Noncoding-Transcript-Variant
Gm73578	predicted gene, 73578	within coordinates
Rr622228	regulatory region 622228	162 bp proximal
Rr622229	regulatory region 622229	165 bp proximal
Rr622230	regulatory region 622230	440 bp proximal
Rr622231	regulatory region 622231	541 bp proximal
Rr622232	regulatory region 622232	668 bp proximal
Rr622233	regulatory region 622233	792 bp proximal
Tssr1662	transcription start site region 1662	11 bp upstream
Tssr1663	transcription start site region 1663	411 bp downstream
Tssr1664	transcription start site region 1664	429 bp downstream
Tssr53717	transcription start site region 53717	within coordinates
Tssr53718	transcription start site region 53718	14 bp downstream
Tssr53719	transcription start site region 53719	64 bp downstream
Tssr53720	transcription start site region 53720	109 bp downstream
Tssr53721	transcription start site region 53721	366 bp downstream
Tssr53722	transcription start site region 53722	383 bp downstream