rs246445554 SNP Detail

Summary

• ID
  rs246445554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141939421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACTGGCT CCGTGGTCTT
  AGGCGATGAC TGCATGGAGT ACTTGGTGAT GGGGCCTTTG AGGATCAGGT CTTCCACAGA
  GCCGCCCACC TCCGTCATAG TCCGACGGAT AGATGTGAAC TTGCGCAGAG GGATTCTGTC
  AAGATGGGAC AGAGGTATTA GCACCCAGCT TTGACTGCTG TGTCCTCCAA CCTCCCACCC
  Y
  AAAATACCCC AGGCTGGGCC AGGGCAGCCC TCTAGTACAG AATGACTGCC AGCCAGGCAT
  GCACCTAGGT GCCTCTAGCA AATTAAATAT CTCAAAATGG CCACAACATG TCACAAACTC
  CTGCCCCAAA GCCATAGGCC CACTGGCCCA CTGACCCACT GAATCAGCTA AGGACATCCT
  ATCACTACCA CAGACACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450073	MGP_WTSI_7_149571589	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246445554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450073	MGP_WTSI_7_149571589	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141939421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	1749 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	524 bp upstream
Rr658152	regulatory region 658152	1001 bp distal
Rr658153	regulatory region 658153	131 bp proximal
Tssr70145	transcription start site region 70145	195 bp downstream
Tssr70146	transcription start site region 70146	174 bp downstream
Tssr70147	transcription start site region 70147	1316 bp upstream
Tssr75787	transcription start site region 75787	95 bp upstream
Tssr75788	transcription start site region 75788	73 bp upstream
Tssr75789	transcription start site region 75789	53 bp upstream
Tssr75790	transcription start site region 75790	195 bp downstream
Tssr75791	transcription start site region 75791	223 bp downstream
Tssr75792	transcription start site region 75792	244 bp downstream
Tssr75793	transcription start site region 75793	987 bp downstream
Tssr75794	transcription start site region 75794	1141 bp downstream
Tssr75795	transcription start site region 75795	1165 bp downstream