rs246445807 SNP Detail

Summary

• ID
  rs246445807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAGTTT TAGTGCATTT
  AAGTTATAGG AAATAGAACA TTATGTTAGA TTTAACTCTT AAAACCAAAA GTCAAATAAA
  ATATATAGAA AATGCTTAGT TGCAGAAGTT TGTAATTGCA AAAAGGCTTC GAATGGAGTA
  GAGAACCCCA GTTGTGCATG TTGATAGGCC ATTTCTACAG GAAACATGAG ACCTACACCA
  R
  AGACTCTCTG GATGAAAAAT ATGGGAGACA TGTTTGGATA ATTGAAGTGA TATGTTTCAC
  TTTGTCTGAA AAAAATCATA AGCTTAGGTT GGTTGCTCAT GGAAAAAAGG GTGATGTTTA
  TTTGCTGGAA AGAGCAGGAA GGAAGATAAT ATGAACATAA TGAAAGCAGT CGTATACTTT
  TTAAAAGTAA ATCAGATTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107375	CHEV_9_96161239	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246445807					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142873 () rs orientation: forward

Symbol	Name	Function Class
Rr684928	regulatory region 684928	1904 bp distal
Rr684929	regulatory region 684929	1525 bp distal
Rr684930	regulatory region 684930	1272 bp distal
Rr684931	regulatory region 684931	382 bp distal
Rr684932	regulatory region 684932	304 bp proximal
Rr684933	regulatory region 684933	1334 bp proximal
Tfdp2	transcription factor Dp 2	Intron
Tssr2975	transcription start site region 2975	1586 bp downstream
Tssr86593	transcription start site region 86593	1990 bp downstream
Tssr86594	transcription start site region 86594	1807 bp downstream
Tssr86595	transcription start site region 86595	1559 bp downstream
Tssr86596	transcription start site region 86596	1543 bp downstream