rs246446352 SNP Detail

Summary

• ID
  rs246446352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133989253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCGCCGCC CCAGCTCCGA GCAAGACAGA
  ACTGCCTCCA GGAGGAGGTG CTCACGCCAC CAACTCACAC GGTTTAGGGC CGCCCTGTGA
  AATGCAGACA ATCCTGTCTC CTGTGGGCAG GACTGGACGG GCGAAAGGCC AAAGGAAAAA
  R
  GAGACTTAAA TGGCAAGCCA CCAACCTGTT TAAGTTGAGC ATCCATCTAA AGATCTAGCC
  AGCAATGCCC AGGCAGCTAC AAAACAAGAG CTAGGGCAGG TGAAGAAGGG TGCAAGTGGG
  AATGGGGTCT GTTGAATAGG ACTTTCTAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319981823	CHEV_1_135958092	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246446352					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133989253 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	76 bp distal
Cpgi759	CpG island 759	1612 bp proximal
Gm19497	predicted gene, 19497	568 bp upstream
Gm57140	predicted gene, 57140	within coordinates
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1453 bp distal
Tssr8846	transcription start site region 8846	425 bp downstream
Tssr8847	transcription start site region 8847	408 bp downstream
Tssr8848	transcription start site region 8848	365 bp downstream
Tssr8849	transcription start site region 8849	1938 bp upstream
Tssr13763	transcription start site region 13763	700 bp upstream
Tssr13764	transcription start site region 13764	642 bp upstream
Tssr13765	transcription start site region 13765	556 bp upstream
Tssr13766	transcription start site region 13766	1767 bp downstream
Tssr13767	transcription start site region 13767	1800 bp downstream
Tssr13768	transcription start site region 13768	1840 bp downstream
Tssr13769	transcription start site region 13769	1851 bp downstream