rs246446456 SNP Detail

Summary

• ID
  rs246446456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162504503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACACTTCC CTGGTCAAAG CACTCTCCCA
  GGGGAGAGGA CCCCTCCCCC CCCCAAAAAA AAGAAAACCC TGCTGCTTAG CCCTCACTCC
  AGGGAATAGG GTTTGTGCTC TGGGGGGTTT TGGGGGGGGG GGGAGTGGCG GGAGCCTGGG
  R
  GTTAGACCTC TTGCAAGCTA CCTTGCAGGT CCTTAAATTT TTTACTAATA TTGACAGTGC
  ACTTGACTGG GCAGTCATAG CCTTGGCTGT TCTCTGGTGA CACAGGATGA TTGCCCCCCT
  GGGAACAATA GGAATAGAAG ATCCCTTCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320601355	CHEV_2_162488319	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246446456					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162504503 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	within coordinates
Cpgi12617	CpG island 12617	890 bp distal
Ptprt	protein tyrosine phosphatase receptor type T	1436 bp upstream
Rr569218	regulatory region 569218	1500 bp distal
Rr569221	regulatory region 569221	1301 bp distal
Rr569222	regulatory region 569222	within coordinates
Rr569223	regulatory region 569223	688 bp proximal
Tssr21417	transcription start site region 21417	1344 bp downstream
Tssr21418	transcription start site region 21418	1323 bp downstream
Tssr21419	transcription start site region 21419	1263 bp downstream
Tssr27272	transcription start site region 27272	1525 bp upstream
Tssr27273	transcription start site region 27273	1493 bp upstream