rs246447431 SNP Detail

Summary

• ID
  rs246447431
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTGCAGG AGTCAGTAGG
  AACGAATTCA TTGGAGACAA TACTCGCATT TGAAGGACCT AGAGGGGTTC GTGAACCTCA
  GCTCGCTCAC CCACTATCTC ATTTTACTTA AAATAATCAC TACTGAATTG AAAGAACTAG
  TTCATCATAA GGCTCAAGTA ACCGCGGCGC GTTGCCCAAA CATTTCATTT ACATTCTGGA
  W
  GGTCTTCTGA GGGTGTCCTT AAGAATGGTC TGTATTAGTC CTGAGCTGAG AAGTCCGAGA
  TTAAGGGCCT TCCTTCTCTG GCCAGTAGAT GGTAGCCTGC ATCTTTCCGT GGGTTTTTCT
  TTTGTGCCTG TCTGCACCTG TCAGGTTTTT TATTTTACAA AATGTAGTTT TGTTTTTATG
  TTACTCTGCT GTTACACAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320920410	CHEV_3_123212150	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246447431					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302881 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	274 bp distal
Gm9369	predicted pseudogene 9369	710 bp downstream
Rr584525	regulatory region 584525	358 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	78 bp proximal
Rr584528	regulatory region 584528	1664 bp proximal
Snhg8	small nucleolar RNA host gene 8	896 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	1166 bp upstream
Tssr31551	transcription start site region 31551	664 bp downstream
Tssr31552	transcription start site region 31552	617 bp downstream
Tssr35502	transcription start site region 35502	891 bp upstream
Tssr35503	transcription start site region 35503	303 bp upstream