rs246470183 SNP Detail

Summary

• ID
  rs246470183
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117583723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATAACT CGGAGTCAGT
  TCTCTCCGTC CACCAGATGG ACTGAATTCA TGCTGTAGGG TTTGGGAAGC AAGCACCTTT
  ACCAGATGCC GTCATATCAG CTACGTTCCT CTTTCGTACC GCATTTTTTT TAGAGAATTG
  CCCGTTTACT TAGATGTCTT GTCTTAGTTG GGGAGGAAAG GGTTTGTTTG GCTTACACGT
  W
  GCTGTTTATC ACCAAAGGGA GTTAGGACTG GAACTCATTC ATACAGGGCA GAAACCTGGA
  GGCAGGAGCT GATGGAGGCC AGGGAGGGGT GCAGCTTAGG GCTTGCTCCG CCTCACCCCC
  CACCCATCAT CTCAGGGATG GCTCCACCCA CAATGGGCTG GCCCCTCCCC CAAATCACTA
  ATTAAAGGAA ATGACTTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499193	CHEV_10_117184874	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246470183					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117583723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2239	CpG island 2239	1163 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	1855 bp distal
Rr439611	regulatory region 439611	1327 bp distal
Rr439612	regulatory region 439612	977 bp distal
Slc35e3	solute carrier family 35, member E3	1460 bp upstream
Tssr99471	transcription start site region 99471	1468 bp upstream
Tssr99472	transcription start site region 99472	1400 bp upstream