CAGCAGAAAG CACCACCCGG GACAGCATTG TCTGCGAAGA GCGGGACAGC GGGCTCCGTG TCCCTGTGAC CCCGACCCGA GCCTGTCAGG GGCAGGAGCA AGATGGCCGC TCGCACATCT CGCGAGAAGA GATCAGCTCG CTTTTTCTCG GAAGTTCTCG GCTTTTTCCC CGCCCCCTCC CCACTATCGC GAGAAGAGGA R AAAAAATGGG TGGGGCTGAG GGAGGGAAAC AAACAAAATC CCGCTGCGGG GACAGGAGAC GGAAAAGCAG GCTGGAAGGG TAGACACAAT TCTCGCGAGA AGTAGAGCGA ATTCCCTCGG AGAGGGGCGG TTGCGCAGAG GTACACCACG TGTGCGGTCC CTCCGGCGCC GAGTCAGGGT CTCTCGTCGA GTCTGGGTCT R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss359121793 | MGP_WTSI_3_105762278 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs246471177 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | A | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss359121793 | MGP_WTSI_3_105762278 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr3:105866676 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Atp5pb | ATP synthase peripheral stalk-membrane subunit b | mRNA-UTR | ||||||
Cpgi13663 | CpG island 13663 | within coordinates | ||||||
Gm42890 | predicted gene 42890 | 143 bp upstream | ||||||
Rr582821 | regulatory region 582821 | within coordinates | ||||||
Rr582822 | regulatory region 582822 | 384 bp proximal | ||||||
Rr582823 | regulatory region 582823 | 729 bp proximal | ||||||
Rr582824 | regulatory region 582824 | 1532 bp proximal | ||||||
Tssr997 | transcription start site region 997 | 149 bp upstream | ||||||
Tssr31092 | transcription start site region 31092 | 50 bp upstream | ||||||
Tssr31093 | transcription start site region 31093 | 93 bp upstream | ||||||
Tssr34944 | transcription start site region 34944 | 123 bp upstream | ||||||
Tssr34945 | transcription start site region 34945 | 80 bp upstream | ||||||
Wdr77 | WD repeat domain 77 | 138 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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