TAAACCCTTG AGAAGAGACG CAGGGTGGGG AGCAGAGAGA TAACCCCCTC CCAAGCCAAG CACCCCATGG AGGAGGGGGG GAGGAGGAGG GGAAGGAGGA GGGAAGCTCT CTTACGAGCC CCCTAGCCCT AGATGGACCA GCACCTTGCA CCCTCTGAGG GACCCCAATC AGCTCCCCTA AGGAGCCACA AATAGCAGCT Y CTCAAGGAAC TTGCAAAAAT CAATGAGAAA TGCGCTTGGG GGATGGGTGC CCACTACCTG ATCTCAAGAA ATCAGTAACA CCCCACCCCC ACCCCACCCA GAGCTTGCCA AACGGAGACT GAGAGCTTTT AAGGGTCGAA TTGTAATTCT TTTCCCAATT CAGGTGGCCA GGAAGAGGTT TTCTGGTTCT CTCTTTTGAA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss366510601 | MGP_WTSI_5_122551251 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs246472549 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss366510601 | MGP_WTSI_5_122551251 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr5:122239305 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Myl2 | myosin, light polypeptide 2, regulatory, cardiac, slow | within coordinates | ||||||
Rr124298 | regulatory region 124298 | within coordinates | ||||||
Rr407055 | regulatory region 407055 | within coordinates | ||||||
Tssr48619 | transcription start site region 48619 | 435 bp downstream | ||||||
Tssr48620 | transcription start site region 48620 | 391 bp downstream | ||||||
Tssr48621 | transcription start site region 48621 | 284 bp downstream | ||||||
Tssr48622 | transcription start site region 48622 | 256 bp downstream | ||||||
Tssr48623 | transcription start site region 48623 | 83 bp downstream | ||||||
Tssr48624 | transcription start site region 48624 | 65 bp downstream | ||||||
Tssr48625 | transcription start site region 48625 | 535 bp upstream | ||||||
Tssr48626 | transcription start site region 48626 | 1408 bp upstream | ||||||
Tssr48627 | transcription start site region 48627 | 1428 bp upstream | ||||||
Tssr48628 | transcription start site region 48628 | 1606 bp upstream | ||||||
Tssr48629 | transcription start site region 48629 | 1654 bp upstream | ||||||
Tssr48630 | transcription start site region 48630 | 1728 bp upstream | ||||||
Tssr48631 | transcription start site region 48631 | 1905 bp upstream | ||||||
Tssr48632 | transcription start site region 48632 | 1926 bp upstream | ||||||
Tssr53075 | transcription start site region 53075 | 1483 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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