rs246485791 SNP Detail

Summary

• ID
  rs246485791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107149448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAGCAA GCATTCACTG
  TGACCCTCCC CTGTGACAAG ACCGGGAGCT GCTGGGCACA GGATCAAATG CACCAAGAAA
  AAGCCCTCTT GGCACAGTCA GGGTGGCTTT GTGGCAGATG CAGAGTGAAA GGTGACAGGG
  GAACTAAACT GGCATCACCT CAAGGATTCA AAGGCAAAAA GATGAAGATG GAGGTGAAGT
  R
  AGTTGAGAAG CAAGTTTGGG AACGTGTGGG AAATGACGAT GGGAAGTGCT GAAAAAAATG
  GGTTCCCTTC TGAGAGGATC AAGCTGGTGG AGGTGTGCTG AGCAAACCTT TAATAGATCT
  CTACACAGCT GCAGACATGG TGGGAGCTTG TGGGCAGCGA CAACATACAG TGGTGGACGT
  GCAGGAAAAG CCATTTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864907	CHEV_3_107045050	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246485791					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107149448 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	within coordinates
Rr582947	regulatory region 582947	256 bp distal
Rr582948	regulatory region 582948	40 bp distal
Tssr31192	transcription start site region 31192	333 bp downstream
Tssr31193	transcription start site region 31193	252 bp downstream
Tssr31194	transcription start site region 31194	214 bp downstream