rs246491405 SNP Detail

Summary

• ID
  rs246491405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42738697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCTGCG GCTGCTGTTC
  TCTGCTAGAG CAACAGTAGT TTCACTTTCT GCTTCTCTTC TCGTTGTGGG GCTGAAGGTT
  GGAGGTCATA GGCGATCTAG GAAACAAGCC AAACTCAAAG GTTGTCACCT CAGCTCCTCC
  GCTTTGATCT TGCCAACTGA AAAAAACCCA AGGACTTTTA ATATATTCAA TACTGCTTGC
  R
  TGTGATAAAA ATTTGAACAA TACCCTGAAG GACAAAGACA GAAGTTTTAA TATTTTTTTG
  ACTAGATGGT TGGAAAATCA TGACCAGATT GCCTTAAACC TTTCATAACA TAGTAGTTTT
  TATTTGTTTC TTTTAATCTT AATGTTACAT CTCGAATGCT TAACTGCAAT AAATTTAAGG
  AAACATAACA AGGAATGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380178241	MGP_WTSI_10_42582507	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246491405					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380178241	MGP_WTSI_10_42582507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42738697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	1400 bp proximal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	1988 bp upstream
Rr368979	regulatory region 368979	171 bp downstream
Rr430641	regulatory region 430641	1898 bp distal
Rr430642	regulatory region 430642	1523 bp distal
Rr430643	regulatory region 430643	within coordinates
Rr430644	regulatory region 430644	825 bp proximal
Rr430645	regulatory region 430645	1970 bp proximal
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr93116	transcription start site region 93116	1987 bp downstream
Tssr93117	transcription start site region 93117	1955 bp downstream
Tssr93118	transcription start site region 93118	1942 bp downstream
Tssr93119	transcription start site region 93119	1891 bp downstream
Tssr93120	transcription start site region 93120	1113 bp downstream
Tssr97454	transcription start site region 97454	1296 bp downstream
Tssr97455	transcription start site region 97455	1520 bp downstream