rs246492039 SNP Detail

Summary

• ID
  rs246492039
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163186058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCCAGTCC TGCAAAGGTA GAGAGCACAG
  CTCTTGGGAG AATCACTCAG ACCTGCGTCG TCTCTGCACA CTGCCACTAC AATCTGGAAG
  GCGCAACGGC TGCAACCAAT TTTCTTGAAA AATATGCTTC GTGTGGCAGC CTAAAGCCTG
  M
  AGAATTGGGG TTCGCTGAGG CCATCATCTG TAATGTTTAC TCTGCTTCCA TATTTTAAGT
  TTATATCTGA TTGTTTTATC AGATTCTTTA AACTTGCTTT TTTTGCTTTT ATATATActc
  tatcttctct ctccccttct ctcctctttt                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320084734	CHEV_1_165288620	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246492039					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163186058 () rs orientation: forward

Symbol	Name	Function Class
Rr846	regulatory region 846	within coordinates
Rr422079	regulatory region 422079	1905 bp distal
Rr422080	regulatory region 422080	within coordinates
Tssr9725	transcription start site region 9725	102 bp downstream