rs246494695 SNP Detail

Summary

• ID
  rs246494695
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGTCTGCT CAGAAGCAGG
  CAGCGGGGGA AGGGCTGTGG CAGACTACAC AGTAAGCGCT TAGTCCATCT CAGAGACTCC
  TGAATGCAAG GAGATAGTCC ACTGTTTCTC AAGGCCCTGG AGAACTGGCT TAGGCTGGAG
  TATAAAACAG TTAGCCAGGG GCAGTTCCAT CAGGACAGTA GCTCAGTTGG CCAGGGAGGA
  Y
  GAGCAAGGGA AAGAGAAGAC TCTTAACAGG CACGGTAACG CAGGCTTGTA AGCCCAGCAC
  TGGAGAGGGA GGCTGAGGCA GGAGGATCTT AATGCAAGGC CAGCTTTAAC TGTACAATGA
  CATGGTAAGA CTGTCAGAAA AAAGAAAAAA AGAAAGAAAG GAAAAAGAAA AAGTAAACTG
  GACTGTGGTA ACAAACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395859333	MGP_WTSI_16_32486527	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246494695					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395859333	MGP_WTSI_16_32486527	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305259 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1618 bp upstream
Rr514710	regulatory region 514710	888 bp distal
Rr514711	regulatory region 514711	691 bp proximal
Rr514712	regulatory region 514712	1428 bp proximal
Rr514713	regulatory region 514713	1629 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1155 bp downstream
Tssr4847	transcription start site region 4847	1174 bp downstream
Tssr137989	transcription start site region 137989	1652 bp upstream
Tssr140806	transcription start site region 140806	266 bp upstream
Tssr140807	transcription start site region 140807	711 bp downstream
Tssr140808	transcription start site region 140808	727 bp downstream
Tssr140809	transcription start site region 140809	754 bp downstream
Tssr140810	transcription start site region 140810	784 bp downstream
Tssr140811	transcription start site region 140811	1202 bp downstream
Tssr140812	transcription start site region 140812	1226 bp downstream
Tssr140813	transcription start site region 140813	1368 bp downstream
Tssr140814	transcription start site region 140814	1432 bp downstream
Tssr140815	transcription start site region 140815	1456 bp downstream