rs246494953 SNP Detail

Summary

• ID
  rs246494953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5819393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgagaaaa tgtctctatc agattgccta
  cagccaaatc tgttggggac atttttatga ttagtgatgg atgtgggagg atccagtcca
  ctgtgagcag taccactctt gggcaggtgg tcctaagtta tataaaaaag caaaccggag
  K
  aagccagtga gctacatgct tGTCTCCACA CAATCCAAAT GTGAGACGCC AAAACATAGG
  TGAGAGGTCC TGACAAGGAA TCCCAGCGTG GACGGGGGCT CACCTGAATC TCCTCCAGGA
  AGAGGTTGGT CTCAACAAAG CGGTTGCTCA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717450	CHEV_19_5769365	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246494953					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5819393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	1137 bp proximal
Rr363624	regulatory region 363624	407 bp proximal
Rr405811	regulatory region 405811	1900 bp upstream
Scyl1	SCY1-like 1 (S. cerevisiae)	within coordinates
Tssr157640	transcription start site region 157640	1905 bp downstream
Tssr157641	transcription start site region 157641	1978 bp downstream