rs246504079 SNP Detail

Summary

• ID
  rs246504079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92424056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTATGGCTC TCCTGGCACC
  AGCAGCGGCA GAGATGTTCA CCGGACAATG AAAAGTTTCT GTTTACAGAC TAAAATCAAA
  GCATGGCCTT CCTTGACACG GTGATGGCGA AGTTCAGAAG GAACAGCTGG GAGTGTGACA
  AGCGCCTACT CAGCCAAGCA GACTGAAGCC CTCGCAGTCA CCACTCACCT CCGGGAGCGC
  Y
  GGGTTCAGTA GAGAAAGAAG GTCTAGCCAG GGCGTGCCGA GGAAGCTTCT GGAACCCCGG
  GAGAGCAGAG GGGCGCACGT TCCACAAGCA AGCTCCCTGG AGCCCCGGCG TGAGGCGGTG
  CACGTAGGCG TAGGCGACTC GGAGGGTGGG GGTGCAGCCG GGATAGCCCG GGACGCGGGG
  TCCCGGAGCA GCGCCCCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074156	CHEV_9_92436841	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246504079					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92424056 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	within coordinates
Gm37545	predicted gene, 37545	1920 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	220 bp upstream
Tssr86520	transcription start site region 86520	252 bp upstream
Tssr86521	transcription start site region 86521	427 bp upstream