rs246521960 SNP Detail

Summary

• ID
  rs246521960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70167830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGCTAAT TTAAAGAAAA
  GTCAGGCTAA AGAGGTGGTA TGGTTCAATG GTTAAGAACA CAGATGCTGG TCTGGAGAGA
  TGGCTCAGCG GTTAAGAGCA CTGACTGCTC TTCCAGAGGT CCTGAGTTCA AATCCCAACA
  ACTACATGGT GGCTCACAGT CATCTATAAT GGGATCTGAT ACACCTCTAC TGGTGTGTTT
  R
  AAGACAGTGT ACTATATACA TAAAATAAAA AAATAAATAA ATCATAAAAA AAAGAACACA
  GATGCTATTT CAGAGGTCCA ATTCCCAGAG TACACATGAC AGCTTACACC CATATGTAAC
  TACAGCTACA GGAGATCTGA TGTCCTCTGC TAGCTTCCGC AGGCACTAGG CATACAAGCG
  GTGCAAACGA AACACCATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375088389	MGP_WTSI_8_72239079	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246521960					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375088389	MGP_WTSI_8_72239079	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70167830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20415	CpG island 20415	1198 bp proximal
Gm51532	predicted gene, 51532	1972 bp upstream
Gm64048	predicted gene, 64048	1378 bp upstream
Rr186712	regulatory region 186712	170 bp proximal
Rr400882	regulatory region 400882	1160 bp upstream
Rr400883	regulatory region 400883	1685 bp upstream
Tssr77669	transcription start site region 77669	1400 bp upstream
Tssr81531	transcription start site region 81531	1235 bp downstream
Tssr81532	transcription start site region 81532	1257 bp downstream
Tssr81533	transcription start site region 81533	1647 bp downstream
Tssr81534	transcription start site region 81534	1670 bp downstream
Zfp869	zinc finger protein 869	within coordinates