rs246522040 SNP Detail

Summary

• ID
  rs246522040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126576785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTGGCG GTGGTGGCGC
  ACGCCTTTAA TCCCAGCACT TGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TTGAGGCCAG
  CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTATA CAGAGAAACC CTGTCTCAAA
  AACAAACAAA CAAAGCAAAC AAAACAAACA ACAACAACAA AACCGAAAGA ATGCTTACTG
  Y
  TCTTCTAGAG GACCTAGATT TGATTCCCAG AACCAACATG ATGGCTTACA ACCACCAGTT
  CCAAGGAATC AATGTCCTCT TCAGGCTATA TATATATATG TGTGTGTGTG TGTGTGTGTA
  TATATATATA TATACGCTGA TAGACACTGA GACCATAGAA GATAAATAAA CTTTTAAAAA
  TGTAAGTAAA TAACAAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078398	MGP_WTSI_7_134121127	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246522040					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078398	MGP_WTSI_7_134121127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126576785 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	Intron
Cdiptos	CDIP transferase, opposite strand	1210 bp upstream
Cpgi19724	CpG island 19724	569 bp distal
Rr368439	regulatory region 368439	1304 bp downstream
Rr655656	regulatory region 655656	1836 bp distal
Rr655657	regulatory region 655657	750 bp distal
Tssr2401	transcription start site region 2401	1015 bp downstream
Tssr69141	transcription start site region 69141	1989 bp downstream
Tssr69142	transcription start site region 69142	1316 bp downstream
Tssr69143	transcription start site region 69143	1213 bp downstream
Tssr69144	transcription start site region 69144	1191 bp downstream
Tssr69145	transcription start site region 69145	1147 bp downstream
Tssr69146	transcription start site region 69146	1069 bp downstream
Tssr69147	transcription start site region 69147	1036 bp downstream
Tssr69148	transcription start site region 69148	994 bp downstream
Tssr69149	transcription start site region 69149	1420 bp upstream
Tssr74866	transcription start site region 74866	1770 bp upstream
Tssr74867	transcription start site region 74867	1766 bp upstream
Tssr74868	transcription start site region 74868	1508 bp upstream
Tssr74869	transcription start site region 74869	1482 bp upstream
Tssr74870	transcription start site region 74870	1471 bp upstream