rs246523683 SNP Detail

Summary

• ID
  rs246523683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105288206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACGAGT GAGATTATCT
  TCGAGACTGA CTGGCCAGTG GGAGGCAGAT GGGCAACTCT GGGAGCTGGC CTGGGACTGG
  ACTGTCTATG AACTTCACAC CAGCAGTTCG CAAGCTCTCC AGTCCAGGAG TCAAGCTTTC
  CTGTATGTGT CTATGTGCCT GCAAACTGTC TCAACACCCC ACCCCTCAAG CCTATCTCTA
  Y
  CATTCATACC TGTGGGGATG AGTCCGTCAC CAGAGCCCCC ATAGCCACCA GACACAATGC
  TAGTTTCATT GAGGTTGGGT CCTGACACCA TCACCTGCTG GAGGTCCTAT AGGTCAGAGA
  AGAGGGGGGC ACCTCAGGAA CACAGGGATG GATGAAACAT TTTGGGGACG GAGACAGTGC
  ATAGTAAAGT CTGTACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370113	CHEV_7_112787513	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246523683					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105288206 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	within coordinates
Cpgi19541	CpG island 19541	1085 bp proximal
Gm45799	predicted gene 45799	1553 bp upstream
Rr400513	regulatory region 400513	1249 bp upstream
Rr652793	regulatory region 652793	567 bp proximal
Rr652794	regulatory region 652794	1068 bp proximal
Rr652795	regulatory region 652795	1307 bp proximal
Timm10b	translocase of inner mitochondrial membrane 10B	1057 bp upstream
Tssr2358	transcription start site region 2358	1417 bp upstream
Tssr68382	transcription start site region 68382	1464 bp upstream
Tssr68383	transcription start site region 68383	1523 bp upstream
Tssr68384	transcription start site region 68384	1784 bp upstream
Tssr68385	transcription start site region 68385	1997 bp upstream
Tssr74083	transcription start site region 74083	1318 bp downstream