rs246530211 SNP Detail

Summary

• ID
  rs246530211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70990170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATAGAGG AGGGAGTAAA
  GCAGGGAGGA GGGGTACCAG GAGGAGGAGG AGGATAAGGG AGGAGTGGCA GGGAGAGGAG
  ATGAAGCAGA CTCATGGTAA GTACTGGGCA TCCTTCACGC CTATGACCCA GCAGGAAGGT
  GTTTTGTCCA CCTACATGAG AACTTGGGGT AGAGACAAGG CCAGGACACA GTCATATCTA
  R
  CTGTTCACCC CTGTGCTTTT GTGGAAAACT GTCTTGGTGT GTTACTCCAA AGTCCTCTGC
  CACCTGCCAC CGCTGCAGCT CTGTGGGACT TCTCACTTAA GGGCAAGATT GAGCTGCATA
  GAGACAGGCA TCCAGCATTC ATTGTTCTCT AGTCCATCCC CTGGTTACAG ACCCTCTGGC
  CTTCCCTTCT AGTGGGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417482	CHEV_13_70980929	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246530211					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70990170 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	240 bp upstream
Cpgi5821	CpG island 5821	211 bp distal
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1896 bp distal
Rr482299	regulatory region 482299	1591 bp distal
Rr482300	regulatory region 482300	1664 bp distal
Rr482301	regulatory region 482301	1391 bp distal
Rr482302	regulatory region 482302	1341 bp distal
Rr482303	regulatory region 482303	308 bp distal
Rr482304	regulatory region 482304	within coordinates
Tssr123158	transcription start site region 123158	335 bp upstream
Tssr123159	transcription start site region 123159	297 bp upstream
Tssr123160	transcription start site region 123160	268 bp upstream
Tssr123161	transcription start site region 123161	241 bp upstream