rs246532858 SNP Detail

Summary

• ID
  rs246532858
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144994555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC ACGCGCATAG AGGGCTCAGG
  W
  GCACCCGCAC TTTACTAAGG AACTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322067440	CHEV_6_144997349	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246532858					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144994555 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	within coordinates
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	within coordinates
Rr148333	regulatory region 148333	1846 bp proximal
Tssr2055	transcription start site region 2055	218 bp downstream
Tssr59519	transcription start site region 59519	281 bp downstream
Tssr64030	transcription start site region 64030	1306 bp upstream
Tssr64031	transcription start site region 64031	1275 bp upstream
Tssr64032	transcription start site region 64032	1215 bp upstream
Tssr64033	transcription start site region 64033	1169 bp upstream
Tssr64034	transcription start site region 64034	1132 bp upstream
Tssr64035	transcription start site region 64035	1072 bp upstream
Tssr64036	transcription start site region 64036	237 bp upstream
Tssr64037	transcription start site region 64037	187 bp upstream
Tssr64038	transcription start site region 64038	159 bp upstream
Tssr64039	transcription start site region 64039	142 bp upstream
Tssr64040	transcription start site region 64040	123 bp upstream
Tssr64041	transcription start site region 64041	100 bp upstream
Tssr64042	transcription start site region 64042	82 bp upstream
Tssr64043	transcription start site region 64043	24 bp upstream
Tssr64044	transcription start site region 64044	8 bp upstream
Tssr64045	transcription start site region 64045	10 bp downstream