rs246536259 SNP Detail

Summary

• ID
  rs246536259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132066049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTAGTGAT CATAACACTC ATGAACTATC
  ATAACATTAT TATGACACCT TGCTTGGCAC ATTGCAGAGA TTGGAGACAG GAGCTGGGGC
  AGAGGGAGCC TCCGATGCAG CCCAAGTCCA CAGGCATAGC TGCCTGTTGG CCACACCCCA
  R
  AAGCTATCCC AGGCCCAAGG CATGACAAAG ACATGCGTTC TTGAGACACA AGGATTTGGA
  TCCCCACCTA CCCCGCCTCA CTGTGGGCTA TGTGCCTCCA TTGAATCTCA CATCTGATAG
  GGTGGGGGCT TTGCGACCCA CGGGGCCCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319976044	CHEV_1_134034888	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246536259					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132066049 () rs orientation: forward

Symbol	Name	Function Class
Cdk18	cyclin dependent kinase 18	within coordinates
Cpgi722	CpG island 722	440 bp proximal
Gm29629	predicted gene 29629	1193 bp upstream
Rr12249	regulatory region 12249	1952 bp proximal
Rr28498	regulatory region 28498	within coordinates
Tssr13627	transcription start site region 13627	1327 bp downstream
Tssr13628	transcription start site region 13628	1337 bp downstream
Tssr13629	transcription start site region 13629	1355 bp downstream