rs246542802 SNP Detail

Summary

• ID
  rs246542802
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135395569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACAGAGA AGCCTTCTTT
  TGTGTTCAAG TTTACTCAGT GTCTTAAGCC AAGAAGACAT TTTCTCTAAG CTAGCAAGAG
  ACTCCCAGAA GTATCAACAG GGACCAGAGT TGCCGAGTTC ACATTCCCAT CAATATGTGT
  GTTCTTGTAG TCATCCAGTG GGGTGAGAAA TGTTAAATGC AACAGGAAGC ACAGCTTTTT
  W
  AATTCCAGGC CTCTCAAGTT CATATGCAAA GCAAAGGACT TCGATGTAAA TAATTTACAT
  ATTTTTTTCG TGCATCAAAC AGCAAGAGGT TCCATCTCTA GAAAGCGCAA TATTAAAATC
  AGGGGGAAAA AAACCCACTT CAGCAAGGAC CTTACTTTAA TCAAGTTTCT CTTTTTAAGG
  TCTGACGAAC ATTAATGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359841205	MGP_WTSI_3_135352772	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246542802					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359841205	MGP_WTSI_3_135352772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135395569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13858	CpG island 13858	846 bp proximal
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr398044	regulatory region 398044	329 bp upstream
Rr585766	regulatory region 585766	982 bp distal
Rr585767	regulatory region 585767	1728 bp proximal
Tssr31841	transcription start site region 31841	677 bp downstream
Tssr31842	transcription start site region 31842	658 bp downstream
Tssr31843	transcription start site region 31843	640 bp downstream
Tssr31844	transcription start site region 31844	605 bp downstream
Tssr31845	transcription start site region 31845	565 bp downstream
Tssr35822	transcription start site region 35822	1880 bp upstream
Tssr35823	transcription start site region 35823	540 bp upstream
Tssr35824	transcription start site region 35824	26 bp upstream
Tssr35825	transcription start site region 35825	1331 bp downstream
Tssr35826	transcription start site region 35826	1457 bp downstream
Tssr35827	transcription start site region 35827	1466 bp downstream
Tssr35828	transcription start site region 35828	1517 bp downstream
Tssr35829	transcription start site region 35829	1577 bp downstream
Tssr35830	transcription start site region 35830	1603 bp downstream
Tssr35831	transcription start site region 35831	1612 bp downstream
Tssr35832	transcription start site region 35832	1680 bp downstream
Tssr35833	transcription start site region 35833	1704 bp downstream