rs246545365 SNP Detail

Summary

• ID
  rs246545365
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117162164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGCAGCC ATTGTTTTAT CTTCACATGC
  CCTAAGCCTA GTGATTTAAG AATCCAGTGT TTTGTAGGTG GAACctctct ctctctctct
  ctctctctct ctctctctct ctctctctct ctctccttcc ctctTtgtgt gtatgtgtgt
  A
  tgtgtgtgtg tgtgtgagag agagagagag agagagagag agagagCCGA CAGGAGAGGA
  GTAAAGACCT ATGGCCCTCT ATCTGTTCTT AGGAAaaaac aaaacaaaac aaaacaTTAA
  GATGAGCCGA AAGCAGCTAC CACCTAGAGA                                 
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324842596	CHEV_14_117323974	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246545365					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117162164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	417 bp proximal
Gpc6	glypican 6	563 bp upstream
Tssr127141	transcription start site region 127141	453 bp upstream
Tssr127142	transcription start site region 127142	507 bp upstream
Tssr127143	transcription start site region 127143	539 bp upstream
Tssr127144	transcription start site region 127144	627 bp upstream
Tssr127145	transcription start site region 127145	753 bp upstream
Tssr127146	transcription start site region 127146	764 bp upstream
Tssr127147	transcription start site region 127147	793 bp upstream
Tssr127148	transcription start site region 127148	806 bp upstream
Tssr127149	transcription start site region 127149	1020 bp upstream
Tssr127150	transcription start site region 127150	1051 bp upstream