rs246545586 SNP Detail

Summary

• ID
  rs246545586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGGAGCC TGCTAGCAGT
  GAGGCTTTCA GCAAGTCTGC CTCTCGGTAG AGGTTTAACT CCACCTGGGA TGTCTCCTAG
  TGGCCCATTG TCGGCAGTCT TAAGAGCACA GGCGGCTACT TGGATTGGGA CTAAGGGACC
  CCACCCCCCA ACACACACAC CCACTGTGCT TGGCGATGCC TTCACTATTG CTGTAGCCGT
  Y
  TTCCTTGGGC AAGAAGGTAC CCACATAGGG ACATGATAAA GCTGAGTCCA TAAATTGAGG
  CAGAAATTTG AAGACATAAA ATAAGGTTTC CAGCTTTCTT TTGTACCACC TGACACGTTT
  CTCCCCATCT TCTACCTCCA TAATCTTCCA CCAACAAGGA AAGCCTCAGA GAGACCACAT
  TTCTTGGGGA CACCACTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355419649	MGP_WTSI_2_118728895	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246545586					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355419649	MGP_WTSI_2_118728895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733640 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	16 bp distal
Gm32957	predicted gene, 32957	1979 bp upstream
Rr397220	regulatory region 397220	1655 bp downstream
Rr563367	regulatory region 563367	1696 bp distal
Rr563369	regulatory region 563369	1846 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1516 bp distal
Rr563372	regulatory region 563372	1058 bp distal
Rr563373	regulatory region 563373	606 bp distal
Rr563374	regulatory region 563374	113 bp distal
Tssr19588	transcription start site region 19588	1756 bp downstream
Tssr19589	transcription start site region 19589	1671 bp downstream
Tssr19590	transcription start site region 19590	1542 bp downstream
Tssr19591	transcription start site region 19591	1496 bp downstream