rs246545615 SNP Detail

Summary

• ID
  rs246545615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31082754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAGATAT CAGTCCAAAT
  GAAGGAGGAT ATACCACTAA GTATTTCCTG TTCCCTTTGT GACAGTGCTA GAAATAAACT
  GAACCCAAGG CTTCAAACAT GCTGCGCAGG AGCCCTGCTG CCAGTTTATA GTCTTAGCTC
  ATGATCAACA GTCTTAACTC TAGGAACCAG GCTTGCCCTT TTACACAAGA TAGCTAGTCT
  Y
  CTCCCAAGAA CCTTTTAAAT ATCTTTATTT ATGTGTCTGC CACATATATA CAGGTGCCTT
  TGAATGCCAG GTGAGAGAGC ATGAGATCTG GGGACCTGGA ACTACAGGTG GCTGTGTGTC
  ACGCAACGTG GGTGTTGGGA ACCAAACTTG GGTTCTTTGA GAGGGCAGGA AGCACCTGTA
  ACTACTGAGT TCTCTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889499	CHEV_9_30979043	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246545615					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31082754 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Tssr88639	transcription start site region 88639	934 bp upstream
Tssr88640	transcription start site region 88640	919 bp upstream
Tssr88641	transcription start site region 88641	899 bp upstream
Tssr88642	transcription start site region 88642	876 bp upstream
Tssr88643	transcription start site region 88643	836 bp upstream