rs246545913 SNP Detail

Summary

• ID
  rs246545913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34506651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGGCGGT GCCGCGGCTC
  GTGCACGAGG TTTCCGGGAG CGCGCCCCGC GCTCGCCTTC GCCCTGTTGG CGCGGACCCC
  GCCCTGCCCC AGCCGAGCGC TCACCTCAGC TGCCACGCCC ATACCCGGCT CACTGCGCTG
  CCCCCCCCCC CCCCCCCCCC CCCCCCCGCT GTAAGCAGCT GGACCTGCCC GGAGTCCGCC
  W
  GACTTTTTAA ATCCAATCGG TGCACCTAGA CAGAAAGGGG CGGGTGACCT TAAATGCCTA
  CAACCGCGTA AGACTAGTCT GATGGACACC CTGCTGTGCT AAACCTACGA AGACATATTT
  AACCTAAAAA TGGAAATGTG TGACCGGCCC TGAGCAAGTC TGTGAGCAGG CCTGCTTCCC
  TCCTGTGCCA GGACTCAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss400238238	MGP_WTSI_18_34533252	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs246545913					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400238238	MGP_WTSI_18_34533252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34506651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9816	CpG island 9816	within coordinates
Reep5	receptor accessory protein 5	within coordinates
Rr351034	regulatory region 351034	1967 bp proximal
Rr352680	regulatory region 352680	within coordinates
Tssr152790	transcription start site region 152790	1753 bp upstream
Tssr152791	transcription start site region 152791	1611 bp upstream
Tssr152792	transcription start site region 152792	1542 bp upstream
Tssr152793	transcription start site region 152793	1112 bp upstream
Tssr152794	transcription start site region 152794	1098 bp upstream
Tssr152795	transcription start site region 152795	1075 bp upstream
Tssr152796	transcription start site region 152796	292 bp upstream
Tssr152797	transcription start site region 152797	155 bp upstream
Tssr152798	transcription start site region 152798	78 bp upstream