rs246552882 SNP Detail

Summary

• ID
  rs246552882
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178235357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTTTT AGGTAAAAAA
  AAAAAAAAAG CTTCCCCAGA AAGTATTTTT TTTTTTTTAG TTATACTTTT ATTACCCCCC
  TCAAAAAAAG TAAAGGAGAA AATCATTAGG GGATGAATTA TTTTTTAAAT TAATTTACCT
  TATGTGTATT GGTGTATTGC CTTTGTGTAT GTCCTTGTGA GGGTGTCGGA TCCCCCAGAA
  S
  TGGAGTTGCA GATGGTTGTG AGCTGCCATG TGTGTTCTGG GAATTGATCC AGGATTCTCT
  GGAAGAGCAG GTAGTGCTTC TAACCTCTGA GCCATCTGTT TTTTTGTTTT TTGGGTTTTT
  TTTTTGTTTT GTTTTGTTTT TTAAACAAAA TCTAAATCAT TTGGTTTTAC CAATGAAAAC
  CCGGGAGCCA GAATCTGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352536939	MGP_WTSI_1_180337923	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246552882					SNP	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352536939	MGP_WTSI_1_180337923	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178235357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	1122 bp distal
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	1364 bp upstream
Gm70923	predicted gene, 70923	850 bp downstream
Rr29069	regulatory region 29069	556 bp distal
Rr372517	regulatory region 372517	754 bp downstream
Tssr10392	transcription start site region 10392	1772 bp downstream
Tssr10393	transcription start site region 10393	1758 bp downstream
Tssr10394	transcription start site region 10394	1747 bp downstream
Tssr10395	transcription start site region 10395	1722 bp downstream
Tssr10396	transcription start site region 10396	1687 bp downstream
Tssr10397	transcription start site region 10397	1232 bp downstream
Tssr15493	transcription start site region 15493	1353 bp upstream