rs246561724 SNP Detail

Summary

• ID
  rs246561724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137722469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGCTT TGATTGAAAA
  ATCTTGGTAC CTGGTATTTA AGTCAGAATA AAACGTCGAA TTCACAGCTC CTATGGAGTA
  AAGGAAGGTG ATACTCCTTT GGATCCCCAC TGGGTTTCTC TGTGTAGCCC TGGCTGCCCT
  AGAACTTGCT CTGTAGACCA AGCTGCCCTT GAACTCAAGA GATCCGCCTG CCTCTGCCTC
  Y
  TGAATGCTGG GATTAAAGGT GTGCGTTACC ATCGATGGGC AAGCAGAGGT GTTGTTACCT
  ATCTGAGAAT AACATTTCAT CATCTCCCCC GCCCCCACCC CCCATCCTTG GACTTGTGAA
  AAATGGACAA ATGATTTTTG GATGTTCCCA GTGCTGTGTG GTTCTTGTGT TTGACTTGTA
  AGTGGTGTTG GGGCTAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363429340	MGP_WTSI_4_137551073	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246561724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363429340	MGP_WTSI_4_137551073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137722469 () rs orientation: forward

Symbol	Name	Function Class
BE691133	expressed sequence BE691133	1798 bp upstream
Cpgi15142	CpG island 15142	672 bp distal
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	431 bp upstream
Rr100351	regulatory region 100351	within coordinates
Rr398623	regulatory region 398623	1560 bp downstream
Tssr39805	transcription start site region 39805	1684 bp downstream
Tssr39806	transcription start site region 39806	1654 bp downstream
Tssr39807	transcription start site region 39807	1425 bp downstream
Tssr39808	transcription start site region 39808	1225 bp downstream
Tssr39809	transcription start site region 39809	1052 bp downstream
Tssr39810	transcription start site region 39810	341 bp downstream
Tssr39811	transcription start site region 39811	670 bp upstream
Tssr44154	transcription start site region 44154	1854 bp upstream
Tssr44155	transcription start site region 44155	399 bp upstream