rs246562226 SNP Detail

Summary

• ID
  rs246562226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40553815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCTTAA CTTTAAGGTC
  TATATTCAGA TCTCTGAGGT TTGATAAGGA CACTCCCAAC GCCCAGGCAC TCTGAATGTA
  CCTCAGCCTG AATTAAACCA TTATCATGAA CAATGCCTGG TCTATCCGTT TCCCCTTCAT
  CCTCAGTATT CCTCCTTTAA TCCCATTTAG ATTTTGGATT ACTGGGCTGT CCCTGTCACA
  Y
  CCTGGGAGTC TAAGCTCATG TGCCCTCATG TGCTTTCCTC TGAACCTGCA ATAGGTGGTA
  GGAAAACCTC AAATCCTTTT GGGATTTGAG CTAGTTCCAC AATTAGCATG AATACATGAT
  TTTATTTATT TATTTATCTA TTTATTTATT GGCTTAGACC TGCCCTCAGT TGCTAACTCT
  TCTCTTAGAT TTTCACCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349352547	MGP_WTSI_1_40571500	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246562226					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349352547	MGP_WTSI_1_40571500	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40553815 () rs orientation: forward

Symbol	Name	Function Class
Il18rap	interleukin 18 receptor accessory protein	733 bp upstream
Rr410075	regulatory region 410075	259 bp proximal
Rr410076	regulatory region 410076	718 bp proximal
Tssr65	transcription start site region 65	840 bp upstream
Tssr6477	transcription start site region 6477	722 bp upstream
Tssr6478	transcription start site region 6478	787 bp upstream
Tssr6479	transcription start site region 6479	816 bp upstream
Tssr11438	transcription start site region 11438	560 bp downstream
Tssr11439	transcription start site region 11439	1792 bp downstream
Tssr11440	transcription start site region 11440	1802 bp downstream
Tssr11441	transcription start site region 11441	1820 bp downstream
Tssr11442	transcription start site region 11442	1836 bp downstream
Tssr11443	transcription start site region 11443	1867 bp downstream