rs246563353 SNP Detail

Summary

• ID
  rs246563353
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3425232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGCCCAG CTGGTGCAGT
  TATTTAAACC AAGGGACTTG GGAGGCTGGA TCAGGATTGG ATGCCCATTG GCTCCGCCCC
  TACCTCAAGG GTCCTTTGAT TGGATGTGGC TGAGCTCTGC CGGCCTATGG GTAGGCGGTG
  CGCAGGTTCC CGGAAGTGGC GCCCAGGGTC AGTGTGTGCT TCTGTTTCCG AGGTGGGCTT
  W
  GGGTCTAGTG TTCCCGGGTG CGATGAGCTC CTTCCAGGGA CAGATGGCGG AGTATCCAAC
  CATCTCCATT GACCGCTTCG ACAGGGAGAA CCTGAAAGCC CGTGCCTACT TCCTTTCGCA
  CTGTCACAAG GGTGAGTGAG CTCCTCTCGT TACCTATTTC AGGGGCGCTA TGGTCTGAAG
  AGGCAATGGC AGAGGTCGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352907401	MGP_WTSI_2_3341467	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246563353					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352907401	MGP_WTSI_2_3341467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3425232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	within coordinates
Dclre1c	DNA cross-link repair 1C	within coordinates
Meig1	meiosis expressed gene 1	1547 bp upstream
Rr367090	regulatory region 367090	40 bp downstream
Rr550902	regulatory region 550902	20 bp distal
Rr550903	regulatory region 550903	252 bp proximal
Tssr15890	transcription start site region 15890	within coordinates
Tssr22364	transcription start site region 22364	1622 bp upstream
Tssr22365	transcription start site region 22365	1595 bp upstream
Tssr22366	transcription start site region 22366	1562 bp upstream
Tssr22367	transcription start site region 22367	171 bp upstream