rs246566060 SNP Detail

Summary

• ID
  rs246566060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80070080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAACTAT GAAGAAATCC
  TCAGACATTC ATTTATTACT TACATGTTGC TATACAGCCA GCCTGGATTC TTCAAATGAC
  ACGATTATAA AAGGTAAAAT GGGCCAGGCA TGGTGGTAAA CACCTTTAGG TCTGTGCACT
  CAGCAGGCAA AAGCAGGTGC ATCTCTTTGA GTTTAAGGCC AGCCTGGTCT ACATAGTTGA
  K
  TTCTAAGACA ACCAGAGCTA CATATAGAGA ATTTGTTTCA AACAAACAAA CAACAACAAA
  AAACGAGGAG AGGGGATGAT ACAGACAGAC AGACCAAAGC CAGGGGTGAT ACTACCTATA
  ATTTTAGCAT TAGGGAAGTA GAGGCAGGAC GATCAGAGGT TCTGCTATTA TACACAGAGA
  GTAAAGGGCT AACCTGGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383995224	MGP_WTSI_11_79992756	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246566060					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383995224	MGP_WTSI_11_79992756	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80070080 () rs orientation: forward

Symbol	Name	Function Class
Adap2	ArfGAP with dual PH domains 2	296 bp downstream
Adap2os	ArfGAP with dual PH domains 2, opposite strand	1625 bp upstream
D11Bhm113	DNA segment, Chr 11, Boehm 113	1733 bp proximal
Rr386348	regulatory region 386348	1511 bp upstream
Rr452447	regulatory region 452447	1271 bp distal
Rr452448	regulatory region 452448	576 bp proximal
Tssr3598	transcription start site region 3598	1763 bp downstream
Tssr103493	transcription start site region 103493	1935 bp downstream
Tssr103494	transcription start site region 103494	1873 bp downstream
Tssr103495	transcription start site region 103495	1806 bp downstream
Tssr103496	transcription start site region 103496	1311 bp downstream
Tssr103497	transcription start site region 103497	1261 bp downstream
Tssr103498	transcription start site region 103498	1209 bp downstream
Tssr103499	transcription start site region 103499	1027 bp downstream
Tssr103500	transcription start site region 103500	970 bp downstream
Tssr103501	transcription start site region 103501	687 bp downstream
Tssr103502	transcription start site region 103502	589 bp downstream
Tssr103503	transcription start site region 103503	530 bp downstream
Tssr103504	transcription start site region 103504	493 bp downstream
Tssr103505	transcription start site region 103505	396 bp downstream
Tssr103506	transcription start site region 103506	80 bp downstream
Tssr103507	transcription start site region 103507	68 bp upstream
Tssr103508	transcription start site region 103508	99 bp upstream