rs246566395 SNP Detail

Summary

• ID
  rs246566395
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:56811804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCACTA TTAGGAGGTG
  TAGCCTTGTT GGACAGGGTA TGTCATTGTG GAGGAAGGCT TTGAGCTCTC ATATAAATGC
  TTGAGCTACA CCCAGTGTGA GACATATTCG GTCTCCTCCT TGCTGCCTTC CAATCAAGAG
  GTAGAGCTCT CTGCTCTTTG TCTCTAACCC TAACCCTCAA CCCCCTGCAC ACTGCTGTGC
  K
  TCCCAGCGTG ATAATAATGG ACTAAACCTC TGAACCTGTA AAACCAGCCT TGATTAAATG
  TTGTCTTTTA TAAGAGTTGC CTTGGTGTGA AGAGTGTCAA TTCACAGAAA TGAGACCCTA
  ACTATGGGTT GAGCCGGGAG TAGTGGCTTA CAATGGTTAT CCAGGCATTT GGGAGGTGCA
  AGTAGGAACC ACTTAGGGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402874757	MGP_WTSI_19_56897862	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246566395					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402874757	MGP_WTSI_19_56897862	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56811804 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	830 bp downstream
Ccdc186	coiled-coil domain containing 186	1182 bp upstream
Cpgi11092	CpG island 11092	747 bp distal
Rr406045	regulatory region 406045	954 bp downstream
Rr550140	regulatory region 550140	1456 bp distal
Rr550141	regulatory region 550141	1193 bp distal
Rr550142	regulatory region 550142	692 bp distal
Tssr157215	transcription start site region 157215	1408 bp downstream
Tssr159886	transcription start site region 159886	1285 bp upstream
Tssr159887	transcription start site region 159887	1152 bp upstream