rs246567351 SNP Detail

Summary

• ID
  rs246567351
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130550657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACATGGTAC ATCTAGCCCT CCAATTCAAA
  ATCACCCAGA TGCTGTGGCC TCGAGCTGCT GTCCCAAGGC CTCTCTCTTG ACAGGAGGGT
  GCCCTTTGTC ACCAGCCTGA GCTCATGATG GGGTCACCGC CCCCTCCCCC TGCCAAATGC
  M
  CAGGTCCCCA GGCTGCACCT CTTCCTGCAT TGCCTCCCAG GGAAAGGGCT TCCTTCAGTG
  TACAGGGCAG CCAGTGGTAA GTGAGGCCAG TCTAGCATCC CTCCTGAGAG GGGATGCCAC
  ATAGCCTCCG TCAACCACTA CTAGAATCCT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318866	CHEV_4_130379261	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246567351					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130550657 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1048 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	1145 bp downstream
Tssr39280	transcription start site region 39280	678 bp downstream
Tssr39281	transcription start site region 39281	620 bp downstream
Tssr39282	transcription start site region 39282	299 bp downstream
Tssr39283	transcription start site region 39283	219 bp downstream
Tssr39284	transcription start site region 39284	11 bp downstream
Tssr39285	transcription start site region 39285	37 bp upstream
Tssr39286	transcription start site region 39286	104 bp upstream
Tssr39287	transcription start site region 39287	130 bp upstream
Tssr39288	transcription start site region 39288	165 bp upstream
Tssr39289	transcription start site region 39289	294 bp upstream
Tssr39290	transcription start site region 39290	301 bp upstream
Tssr39291	transcription start site region 39291	449 bp upstream
Tssr39292	transcription start site region 39292	526 bp upstream