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rs246577349 SNP Detail
Summary
  • ID
    rs246577349
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr18:82603188 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCACCATCTC TCCTCAGTGG
CTCCCCAGAG CTGGTGCTTT TAAGAACCCT GTTTCCTCTC AGAGCCCAGG GAGAGTCCAA
GGACATGGCG CATCTGGAAG TGGGACTGCA GGAGTTCTCT GGTGGCCTCG TGCTGTCCCT
CTGGCCACTT CTCATGGTGG GGTGGTCAGC GGCAGCTCGC CATGGCAGTG CCCATTGGTA
Y
ACACTAACCT CGGTGGAAAA ATAACCATTC CCTGCCTCCT AGAAAGGACT CATTCTTAGC
TTTAGGGGGG TTCCTGTCAC TGAATCGAGT CGCTGCCCTG GATGCAGGGC TGGCCTGGGC
GACGCTCCAG GGATGAGGAG CTGAGAACCC CAGTCTAATA ATGTCCATCG ACACCTCCTT
ATCCCTCTAA CGTACTATGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401436747 MGP_WTSI_18_82754455 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246577349 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401436747 MGP_WTSI_18_82754455 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr18:82603188 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D18Nds1 DNA segment, Chr 18, Nuffield Department of Surgery 1 1397 bp proximal
Gm58829 predicted gene, 58829 within coordinates
Mbp myelin basic protein mRNA-UTR
Rr541827 regulatory region 541827 928 bp distal
Tssr152152 transcription start site region 152152 938 bp downstream
Tssr152153 transcription start site region 152153 814 bp downstream
Tssr152154 transcription start site region 152154 791 bp downstream
Tssr152155 transcription start site region 152155 755 bp downstream
Tssr152156 transcription start site region 152156 686 bp downstream
Tssr152157 transcription start site region 152157 608 bp downstream
Tssr152158 transcription start site region 152158 571 bp downstream
Tssr152159 transcription start site region 152159 547 bp downstream
Tssr152160 transcription start site region 152160 501 bp downstream
Tssr152161 transcription start site region 152161 485 bp downstream
Tssr152162 transcription start site region 152162 464 bp downstream
Tssr152163 transcription start site region 152163 447 bp downstream
Tssr152164 transcription start site region 152164 402 bp downstream
Tssr152165 transcription start site region 152165 329 bp downstream
Tssr152166 transcription start site region 152166 293 bp downstream
Tssr152167 transcription start site region 152167 261 bp downstream
Tssr152168 transcription start site region 152168 232 bp downstream
Tssr152169 transcription start site region 152169 179 bp downstream
Tssr152170 transcription start site region 152170 71 bp downstream
Tssr152171 transcription start site region 152171 27 bp downstream
Tssr152172 transcription start site region 152172 62 bp upstream
Tssr152173 transcription start site region 152173 85 bp upstream
Tssr152174 transcription start site region 152174 103 bp upstream
Tssr152175 transcription start site region 152175 126 bp upstream
Tssr152176 transcription start site region 152176 335 bp upstream
Tssr152177 transcription start site region 152177 503 bp upstream
Tssr154083 transcription start site region 154083 833 bp upstream
Tssr154084 transcription start site region 154084 779 bp upstream
Tssr154085 transcription start site region 154085 522 bp upstream
Tssr154086 transcription start site region 154086 5 bp downstream
Tssr154087 transcription start site region 154087 220 bp downstream
Tssr154088 transcription start site region 154088 260 bp downstream
Tssr154089 transcription start site region 154089 371 bp downstream
Tssr154090 transcription start site region 154090 443 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory