rs246578152 SNP Detail

Summary

• ID
  rs246578152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73967160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTCACTG GCGCGGCCTC AGGCCCAGAT
  TCTTACACCA TGTTCCCCAC TCTCGGCTTA CCTGTCAGCA CTGAGGATGG GGCTGCTTGT
  GGAGAGGGGG CTCGGGGAGA CAAAGGAGCC CCCTGGGGTC CCGTTCCTCA GGGGTGTCTC
  R
  TGCCCATAGG CGTGAGCAGC TGGTGCGCTG AAGCTCTTAG GCTCAACGTC CTGAGCTCGA
  GGCCCTGCCA CCGCTGTCCT CGCCACGGAC TCCACATAGC TCCGGGGCTC TAGAAGGAAA
  GAGACAAAGA ATGAGCATAG ATGTGGTAGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319792981	CHEV_1_73974575	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246578152					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73967160 () rs orientation: forward

Symbol	Name	Function Class
Rr413030	regulatory region 413030	1429 bp distal
Rr413031	regulatory region 413031	1541 bp distal
Rr413032	regulatory region 413032	1192 bp distal
Rr413033	regulatory region 413033	268 bp proximal
Rr413034	regulatory region 413034	502 bp proximal
Rr413035	regulatory region 413035	1070 bp proximal
Rr413036	regulatory region 413036	1903 bp proximal
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	494 bp downstream
Tssr12216	transcription start site region 12216	503 bp downstream
Tssr12217	transcription start site region 12217	1316 bp downstream