rs246584995 SNP Detail

Summary

• ID
  rs246584995
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127689575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTTTCC ACTTCTAAAA
  TGAAGTTCAG CTCTGCTCGG TGGTGCTGTG AAACTTGCTC TGGGAGAGTC CCGGTGTCAC
  CTAGGCACCG ACCCGTGCTT CCCGATCCTC TGTGCGGGCC GTCCGCCCAC CCCGTCCAGG
  GCGCGTGCAG TGCTCGGAAT TCGAGCGCAC GGCGCGCCCA CGTAGCGCAA GTTGCCGGGT
  R
  GTTTTGAGGT GAGGCTCCGG AGGGCATTTC CACCGAGCCC GGCCCCGCCC GTCAACCGCT
  CGCCGCGTGC CCAGCCGCCA CCCCGCGGCC CGCGCGCCCG CGCTCACCTG CTCGCCCTCG
  TCCTGCGGCC GCCGGCGCCG CGGGCTCGCC CCGTGCTCCG GCTCCTCAAC CCGCCCGGCC
  GGCGCCGCCC CGTCCTCGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359650139	MGP_WTSI_3_127598844	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246584995					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359650139	MGP_WTSI_3_127598844	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127689575 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	within coordinates
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	347 bp upstream
Rr584895	regulatory region 584895	1619 bp distal
Rr584896	regulatory region 584896	72 bp proximal
Rr584897	regulatory region 584897	352 bp proximal
Tssr35606	transcription start site region 35606	1318 bp upstream
Tssr35607	transcription start site region 35607	413 bp upstream
Tssr35608	transcription start site region 35608	294 bp downstream
Tssr35609	transcription start site region 35609	321 bp downstream
Tssr35610	transcription start site region 35610	345 bp downstream