rs246590369 SNP Detail

Summary

• ID
  rs246590369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37883187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACATGC TGCAACCCTA
  CCACTTTAGC AGACCGGAGC TCTTTTGAAG GCAAGTCTGT TAAAATTAAG TAAATGTCAG
  AAACAAATGC ATTGGCCCCG ACAGACACAC AAACTAAATC TAAGGCTGTT CGTTGGTGTT
  CTTAAAGGAC AAAACAATAT GTCTTTTCGA ATACATTTTT TCAAACAATA ACTGAATATA
  Y
  GCTTTAGATA TTTGAAGTTT TTCATTAATA TCCAACCAAC AATTCATAAC TATGTGCTTA
  GAATCTTTAT AAACATAATC AAGCCCATTA GCCCAGCGGC ATTCCTTCTG CATATGATTG
  TGTGGCATCT TACTATACAG CCTTTTAATT TCACTTTTCT TGCCCGATGA TGATTCCAAG
  AATTTATGCA AGGTTAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325585823	CHEV_18_37909788	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246590369					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37883187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9944	CpG island 9944	631 bp distal
Gm26672	predicted gene, 26672	within coordinates
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	Intron
Pcdhga1	protocadherin gamma subfamily A, 1	Intron
Pcdhga2	protocadherin gamma subfamily A, 2	Intron
Pcdhga3	protocadherin gamma subfamily A, 3	Intron
Pcdhga4	protocadherin gamma subfamily A, 4	Intron
Pcdhga5	protocadherin gamma subfamily A, 5	Intron
Pcdhga6	protocadherin gamma subfamily A, 6	Intron
Pcdhga7	protocadherin gamma subfamily A, 7	Intron
Pcdhga8	protocadherin gamma subfamily A, 8	Intron
Pcdhga9	protocadherin gamma subfamily A, 9	Intron
Pcdhga10	protocadherin gamma subfamily A, 10	Intron
Pcdhgb1	protocadherin gamma subfamily B, 1	Intron
Pcdhgb2	protocadherin gamma subfamily B, 2	Intron
Pcdhgb4	protocadherin gamma subfamily B, 4	Intron
Pcdhgb5	protocadherin gamma subfamily B, 5	Intron
Pcdhgb6	protocadherin gamma subfamily B, 6	Intron
Pcdhgb7	protocadherin gamma subfamily B, 7	1485 bp upstream
Rr536317	regulatory region 536317	1305 bp proximal
Tssr150733	transcription start site region 150733	1467 bp upstream