rs246591605 SNP Detail

Summary

• ID
  rs246591605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126815346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGATAG AAGGAGAAAC
  GGACATTACA TGGCTAGAAA CAGTGGGGTA GATAGAATGG GGTGATCAGA GAGAAAGAAC
  GATATGAAGG ACAAATGGTG AGAAATGGCC ACACAAGATG ACCAAAACCA AACCTCAGAG
  ACATGATGGT GAGAAACTCA GATAGGACAA ATATCAAAAT ACGAGGGGGC CGGGCGTGGT
  R
  GCCCACGCCT TTAATCCCAG CACTCCGGGA GGCAGAGGCA GCGGCAGCCG GATTTCTGAG
  TTCGAGGCCA GCCTGGTCTA TAAAGTGAGG TCCAGGACAG CCAGGGCTAT ACAGAGAAAC
  CCTGTCTCGA AAAACCAAAA AAAAAAAAAA ACAAAAAAAA AAAAAAACAA AAAACAAAAA
  AAAAACAAAA AAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373083324	MGP_WTSI_7_134359688	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246591605					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373083324	MGP_WTSI_7_134359688	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126815346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19731	CpG island 19731	1267 bp distal
Cpgi19732	CpG island 19732	690 bp distal
Mylpf	myosin light chain, phosphorylatable, fast skeletal muscle	1887 bp downstream
Rr368445	regulatory region 368445	1843 bp upstream
Rr655747	regulatory region 655747	713 bp distal
Septin1	septin 1	within coordinates
Tssr69178	transcription start site region 69178	1930 bp downstream
Tssr69179	transcription start site region 69179	1913 bp downstream
Tssr69180	transcription start site region 69180	1607 bp downstream
Tssr74960	transcription start site region 74960	1957 bp upstream
Tssr74961	transcription start site region 74961	1411 bp upstream
Tssr74962	transcription start site region 74962	1141 bp upstream
Tssr74963	transcription start site region 74963	1104 bp upstream
Tssr74964	transcription start site region 74964	1071 bp upstream
Tssr74965	transcription start site region 74965	825 bp upstream
Tssr74966	transcription start site region 74966	731 bp upstream
Tssr74967	transcription start site region 74967	479 bp upstream
Tssr74968	transcription start site region 74968	1835 bp downstream