rs246593017 SNP Detail

Summary

• ID
  rs246593017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7870122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGGAGA CCCGCTTTCT
  TCCTTTCCCG CGATGTCTCA CAGGACGGTC CTTCTTTACT GTTTTTCAGC TGTCACGACC
  GGAGAGGGGA CTCTCAGCCT TTCCAGGTAC CAGCCGATCC TGGGTGGAGG GATTGGAGGG
  GCTGGAGGGG GAAGGGAGGG ACTGCTACTC GAGCGCAGGC TTCAGAAGTC GCTACAGGCC
  Y
  TTTGGTGCAA CAAATCTGAA AGTAGCACCA CTGGTCCGCT TAAAATTCAG TATTGGGTTT
  TATTAGCATT CTCCAAATGC ATCTTGAGAG GTGACTAGAG GAAGCACAGG GGTTTGTTTT
  GCCTTTTGTT TTTTTGTTTG TTTGCCTGTT TGTTTTTAAG GGAAAAAAAT ACTCGGAAAC
  AGGAAGACCT GGCTTGGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399628985	MGP_WTSI_18_7870120	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246593017					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399628985	MGP_WTSI_18_7870120	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7870122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	1 bp distal
Gm9993	predicted gene 9993	1009 bp upstream
Rr405554	regulatory region 405554	854 bp downstream
Rr533616	regulatory region 533616	1046 bp distal
Rr533617	regulatory region 533617	611 bp distal
Rr533618	regulatory region 533618	within coordinates
Tssr149978	transcription start site region 149978	1628 bp downstream
Tssr149979	transcription start site region 149979	1260 bp downstream
Tssr149980	transcription start site region 149980	1234 bp downstream
Tssr149981	transcription start site region 149981	970 bp downstream
Tssr149982	transcription start site region 149982	913 bp downstream
Tssr149983	transcription start site region 149983	896 bp downstream
Tssr149984	transcription start site region 149984	793 bp downstream
Tssr149985	transcription start site region 149985	741 bp downstream
Tssr149986	transcription start site region 149986	395 bp downstream
Tssr149987	transcription start site region 149987	224 bp downstream
Tssr152379	transcription start site region 152379	998 bp upstream
Wac	WW domain containing adaptor with coiled-coil	within coordinates