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rs246599315 SNP Detail
Summary
  • ID
    rs246599315
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr9:110839230 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGGAGGCAA GACCTAGTAT
    GGCAGTAGAA AGGAAGTGCT GGGACAGCTG TGGTCCCATG CAAACATGTC AGCATCAGGT
    TCCAACTCTG CTTACTTGGT GTGGTTGCTG TTATCATTTC TTCTAGGCCC TGCCCAACAG
    TTACCTAGCA ACAGCCAGGT ACAAGCCTGG CTCCCCTAAC AAGACTGTTA GGACTCTCTC
    C
    CTCCCCCTCC CTCCCCTCCC CCTCCCCCCT CCCTCTCTTC TTCCTTCCCT TCCCCCCCTC
    TCCTCATCTT TCTCTCTCTC CACATGTTCC TGGATGGCCT CTTCCCTTCT TTTTCCTCTC
    TCTTTCTGTC CTCTTTCTTT CCCTGCCTCC ACTCCCTTCC CCACAGCCCA TAACCTAAAT
    AAACTTCATT TTGTACTAGA                                            
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss378915877 MGP_WTSI_9_110912666 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246599315 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss378915877 MGP_WTSI_9_110912666 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:110839230 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr207420 regulatory region 207420 1171 bp proximal
Tssr87455 transcription start site region 87455 1033 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory