rs246602060 SNP Detail

Summary

• ID
  rs246602060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATAACTAA TGATATTGCA TATATTTCCC CTTACCATTC
  CTCTCTTGTG TGGCAAATGT TTGTTCAAAG CCATTGTACA ATTTTTACTG CTGGTAGTAG
  Y
  TTTCTTATTT TTGAGGGCTT TGCTTTATTT TAGTAGTTTT TTTTTTAATG TAGCAAGATA
  ACATAATATC ACCATTTTAG CCATTTACCT AAGCAAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588886	CHEV_2_158209542	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246602060					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225726 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1632 bp downstream
Tssr21319	transcription start site region 21319	1218 bp downstream
Tssr21320	transcription start site region 21320	1182 bp downstream
Tssr21321	transcription start site region 21321	1072 bp downstream
Tssr21322	transcription start site region 21322	949 bp downstream
Tssr21323	transcription start site region 21323	905 bp downstream
Tssr21324	transcription start site region 21324	867 bp downstream
Tssr21325	transcription start site region 21325	831 bp downstream
Tssr21326	transcription start site region 21326	807 bp downstream
Tssr21327	transcription start site region 21327	770 bp downstream
Tssr21328	transcription start site region 21328	724 bp downstream
Tssr21329	transcription start site region 21329	711 bp downstream
Tssr21330	transcription start site region 21330	622 bp downstream
Tssr21331	transcription start site region 21331	112 bp downstream
Tssr21332	transcription start site region 21332	12 bp upstream
Tssr21333	transcription start site region 21333	44 bp upstream
Tssr21334	transcription start site region 21334	811 bp upstream
Tssr21335	transcription start site region 21335	1167 bp upstream
Tssr21336	transcription start site region 21336	1221 bp upstream
Tssr21337	transcription start site region 21337	1325 bp upstream
Tssr21338	transcription start site region 21338	1892 bp upstream
Tssr27228	transcription start site region 27228	588 bp upstream