rs246606765 SNP Detail

Summary

• ID
  rs246606765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGAAC AGAGACACGA
  GAGGCAGAGA CAGTCAGATC CCTAGGAGCA CACAGGCCGG CTTGGTCCAC GGTGTGAATT
  TCTGCACTGT GTTAGTTATT GTTTGGTTGC TGTGAGAAAA CATCTTAACA AAAGCAACTC
  AGCAAAGGAA GGGTCCATTT TGGCTTGTAG CGTCGGGGAT ACACTCCATC CTGGAGGGGA
  Y
  ACATGGTGGC CAGAGGCAGC TGTACATTGC ATGCTCAGTC AGGAAGCTAA GAGATACACG
  CAGCCTCTGG GTTCTCTTTG TCCTTTTGAT ATAGCTAGGG ATTTTGGCCC ACGGAATGTT
  ACTGCCCATA GGTCAGGGTG GATCTTCTTA CACCAAAGAA CTGAGTCCAG ATAGTCTCTC
  ATTCATGTTC CTATAGGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408114	CHEV_17_48487352	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246606765					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655055 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1855 bp distal
Rr335234	regulatory region 335234	1054 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1610 bp downstream
Tssr145094	transcription start site region 145094	1582 bp downstream
Tssr145095	transcription start site region 145095	1534 bp downstream
Tssr145096	transcription start site region 145096	1501 bp downstream
Tssr145097	transcription start site region 145097	496 bp downstream
Tssr145098	transcription start site region 145098	154 bp downstream
Tssr145099	transcription start site region 145099	453 bp upstream
Tssr145100	transcription start site region 145100	482 bp upstream
Tssr145101	transcription start site region 145101	519 bp upstream
Tssr145102	transcription start site region 145102	618 bp upstream
Tssr148525	transcription start site region 148525	663 bp downstream