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rs246612099 SNP Detail
Summary
  • ID
    rs246612099
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48043479 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCAGACTCT TCTTCCTTTG
GTCCTCTGTA GCCAGCAGGG GTCTAACGGC GGGCAGATTG TGTTCGGTGG CGTGGACGAG
AACCTGTACA CTGGCGAGCT CACCTGGATT CCTGTCACCC AGGAGCTTTA CTGGCAGATC
ACCATTGACG AGTGAGTCTG GTCGGGCCTC AGACATTCTA AGCCATCCAC CCACCCATCC
Y
GGCACTGCTG GTAGAGGGTG GGTGGGAGAC CCTCCTCCAA AGTCATAGGT CACCTATGCA
GCAGTCTGGC AGCCCAGCCA ACTCCGAAGA AGAGAGGGTA TGGCCACACA GGGACAGTCA
GCACATATGA TCTCAGACAC CAGGGAGGGC CCCGGTAATC CAACGCTACA GGTTAGAAGC
TGTTTCACCA TCCTTGCGAC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398353024 MGP_WTSI_17_47869503 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246612099 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398353024 MGP_WTSI_17_47869503 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48043479 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 1824 bp distal
Tssr5149 transcription start site region 5149 1066 bp downstream
Tssr145017 transcription start site region 145017 1949 bp downstream
Tssr145018 transcription start site region 145018 1943 bp downstream
Tssr145019 transcription start site region 145019 1912 bp downstream
Tssr145020 transcription start site region 145020 1883 bp downstream
Tssr145021 transcription start site region 145021 1853 bp downstream
Tssr145022 transcription start site region 145022 1826 bp downstream
Tssr145023 transcription start site region 145023 1788 bp downstream
Tssr145024 transcription start site region 145024 1686 bp downstream
Tssr145025 transcription start site region 145025 1323 bp downstream
Tssr145026 transcription start site region 145026 1083 bp downstream
Tssr145027 transcription start site region 145027 142 bp downstream
Tssr145028 transcription start site region 145028 101 bp downstream
Tssr145029 transcription start site region 145029 84 bp downstream
Tssr145030 transcription start site region 145030 400 bp upstream
Tssr145031 transcription start site region 145031 416 bp upstream
Tssr145032 transcription start site region 145032 424 bp upstream
Tssr145033 transcription start site region 145033 505 bp upstream
Tssr145034 transcription start site region 145034 507 bp upstream
Tssr145035 transcription start site region 145035 1197 bp upstream
Tssr145036 transcription start site region 145036 1205 bp upstream
Tssr145037 transcription start site region 145037 1249 bp upstream
Tssr145038 transcription start site region 145038 1259 bp upstream
Tssr145039 transcription start site region 145039 1624 bp upstream
Tssr145040 transcription start site region 145040 1648 bp upstream
Tssr145041 transcription start site region 145041 1685 bp upstream
Tssr145042 transcription start site region 145042 1703 bp upstream
Tssr145043 transcription start site region 145043 1758 bp upstream
Tssr145044 transcription start site region 145044 1775 bp upstream
Tssr145045 transcription start site region 145045 1785 bp upstream
Tssr145046 transcription start site region 145046 1804 bp upstream
Tssr145047 transcription start site region 145047 1852 bp upstream
Tssr145048 transcription start site region 145048 1884 bp upstream
Tssr148467 transcription start site region 148467 1922 bp upstream
Tssr148468 transcription start site region 148468 1885 bp upstream
Tssr148469 transcription start site region 148469 1791 bp upstream
Tssr148470 transcription start site region 148470 116 bp upstream
Tssr148471 transcription start site region 148471 94 bp upstream
Tssr148472 transcription start site region 148472 80 bp upstream
Tssr148473 transcription start site region 148473 66 bp upstream
Tssr148474 transcription start site region 148474 48 bp upstream
Tssr148475 transcription start site region 148475 473 bp downstream
Tssr148476 transcription start site region 148476 501 bp downstream
Tssr148477 transcription start site region 148477 532 bp downstream
Tssr148478 transcription start site region 148478 1244 bp downstream
Tssr148479 transcription start site region 148479 1282 bp downstream
Tssr148480 transcription start site region 148480 1760 bp downstream
Tssr148481 transcription start site region 148481 1790 bp downstream
Tssr148482 transcription start site region 148482 1921 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory