rs246613402 SNP Detail

Summary

• ID
  rs246613402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCGCCT TAGACCTAGC
  CACGCCCTGT GGCTCACGGT CAAGGGGCTT TGCCTTAAGC TACAAACTCC ACTTAGGGCT
  TTCTGCAGGC GGTGTGACAA ATCGAGGGAA TATTCTGTGT CCTGGGATAT CACTTCCCGC
  CGGAACAGCT TGTGATTGGA CAACCACAGA ACCAGCACTG TGGAGGGGAA GTGTCGCCCC
  R
  CAGCTACACA GGCTTGTGCC TAACTCCTGT CTTTTCTTTT TCCCAGGGAG GAAGAGACAG
  CCGCTCTGGA TCTCCCATGG CGAGACGCTG AGAGCCCTCC CCGCTCAGCC TTCCCGAATC
  CTGCCCTCGG CTTCTTAATA TAACTGCCTT AAACTTTTAA TTCTACTTGC ACCGATTAGC
  TAGTTAGAGC AGACCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436730	MGP_WTSI_18_82753457	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246613402					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436730	MGP_WTSI_18_82753457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602190 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbp	myelin basic protein			Intron
				Noncoding-Transcript-Variant
Rr541827	regulatory region 541827			within coordinates
Tssr152152	transcription start site region 152152			43 bp upstream
Tssr152153	transcription start site region 152153			71 bp upstream
Tssr152154	transcription start site region 152154			185 bp upstream
Tssr152155	transcription start site region 152155			223 bp upstream
Tssr152156	transcription start site region 152156			296 bp upstream
Tssr152157	transcription start site region 152157			347 bp upstream
Tssr152158	transcription start site region 152158			404 bp upstream
Tssr152159	transcription start site region 152159			434 bp upstream
Tssr152160	transcription start site region 152160			484 bp upstream
Tssr152161	transcription start site region 152161			501 bp upstream
Tssr152162	transcription start site region 152162			517 bp upstream
Tssr152163	transcription start site region 152163			542 bp upstream
Tssr152164	transcription start site region 152164			582 bp upstream
Tssr152165	transcription start site region 152165			635 bp upstream
Tssr152166	transcription start site region 152166			701 bp upstream
Tssr152167	transcription start site region 152167			716 bp upstream
Tssr152168	transcription start site region 152168			751 bp upstream
Tssr152169	transcription start site region 152169			812 bp upstream
Tssr152170	transcription start site region 152170			893 bp upstream
Tssr152171	transcription start site region 152171			953 bp upstream
Tssr152172	transcription start site region 152172			1060 bp upstream
Tssr152173	transcription start site region 152173			1083 bp upstream
Tssr152174	transcription start site region 152174			1101 bp upstream
Tssr152175	transcription start site region 152175			1124 bp upstream
Tssr152176	transcription start site region 152176			1333 bp upstream
Tssr152177	transcription start site region 152177			1501 bp upstream
Tssr154083	transcription start site region 154083			152 bp downstream
Tssr154084	transcription start site region 154084			176 bp downstream
Tssr154085	transcription start site region 154085			448 bp downstream
Tssr154086	transcription start site region 154086			1003 bp downstream
Tssr154087	transcription start site region 154087			1218 bp downstream
Tssr154088	transcription start site region 154088			1258 bp downstream
Tssr154089	transcription start site region 154089			1369 bp downstream
Tssr154090	transcription start site region 154090			1441 bp downstream